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Rep polyprotein:
Full length:
Polyprotein (rep) [ Human Pathogens Alignment | Extended Alignment ]
Polyprotein (rep1a) [ Human Pathogens Alignment | Extended Alignment ]
Cleavage products:
Host translation inhibitor nsp1 (Nsp1) [ Human Pathogens Alignment | Extended Alignment ]
Nsp2 [ Human Pathogens Alignment | Extended Alignment ]
Papain-like proteinase (Nsp3) [ Human Pathogens Alignment | Extended Alignment ]
Nsp4 [ Human Pathogens Alignment | Extended Alignment ]
3C-like proteinase (Nsp5) [ Human Pathogens Alignment | Extended Alignment ]
Nsp6 [ Human Pathogens Alignment | Extended Alignment ]
Nsp7 [ Human Pathogens Alignment | Extended Alignment ]
Nsp8 [ Human Pathogens Alignment | Extended Alignment ]
Nsp9 [ Human Pathogens Alignment | Extended Alignment ]
Nsp10 [ Human Pathogens Alignment | Extended Alignment ]
Nsp11 (Rep1a only) [ Human Pathogens Alignment | Extended Alignment ]
RNA-directed RNA polymerase (Nsp12 - Rep1ab only) [ Human Pathogens Alignment | Extended Alignment ]
Helicase (Nsp13 - Rep1ab only) [ Human Pathogens Alignment | Extended Alignment ]
Proofreading exoribonuclease (Nsp14 - Rep1ab only) [ Human Pathogens Alignment | Extended Alignment ]
Uridylate-specific endoribonuclease (Nsp15 - Rep1ab only) [ Human Pathogens Alignment | Extended Alignment ]
2'-O-methyltransferase (Nsp16 - Rep1ab only) [ Human Pathogens Alignment | Extended Alignment ]
Accessory Factors:
3a [ Human Pathogens Alignment | Extended Alignment ]
6 [ Human Pathogens Alignment | Extended Alignment ]
7a [ Human Pathogens Alignment | Extended Alignment ]
7b [ Human Pathogens Alignment | Extended Alignment ]
8 [ Human Pathogens Alignment | Extended Alignment ]
9b [ Human Pathogens Alignment | Extended Alignment ]
Orf10 [ Human Pathogens Alignment | Extended Alignment ]
Orf14 [ Human Pathogens Alignment | Extended Alignment ]
Structural protein:
Envelope (E) [ Human Pathogens | Human Pathogens ]
Membrane (M) [ Human Pathogens | Human Pathogens ]
Nucleoprotein (N) [ Human Pathogens | Human Pathogens ]
Spike (S) [ Human Pathogens | Human Pathogens ]
Rep polyprotein:
Full length:
Polyprotein (rep) [ Human Pathogens Alignment | Extended Alignment ]
Polyprotein (rep1a) [ Human Pathogens Alignment | Extended Alignment ]
Cleavage products:
Host translation inhibitor nsp1 (Nsp1) [ Human Pathogens Alignment | Extended Alignment ]
Nsp2 [ Human Pathogens Alignment | Extended Alignment ]
Papain-like proteinase (Nsp3) [ Human Pathogens Alignment | Extended Alignment ]
Nsp4 [ Human Pathogens Alignment | Extended Alignment ]
3C-like proteinase (Nsp5) [ Human Pathogens Alignment | Extended Alignment ]
Nsp6 [ Human Pathogens Alignment | Extended Alignment ]
Nsp7 [ Human Pathogens Alignment | Extended Alignment ]
Nsp8 [ Human Pathogens Alignment | Extended Alignment ]
Nsp9 [ Human Pathogens Alignment | Extended Alignment ]
Nsp10 [ Human Pathogens Alignment | Extended Alignment ]
Nsp11 (Rep1a only) [ Human Pathogens Alignment | Extended Alignment ]
RNA-directed RNA polymerase (Nsp12 - Rep1ab only) [ Human Pathogens Alignment | Extended Alignment ]
Helicase (Nsp13 - Rep1ab only) [ Human Pathogens Alignment | Extended Alignment ]
Proofreading exoribonuclease (Nsp14 - Rep1ab only) [ Human Pathogens Alignment | Extended Alignment ]
Uridylate-specific endoribonuclease (Nsp15 - Rep1ab only) [ Human Pathogens Alignment | Extended Alignment ]
2'-O-methyltransferase (Nsp16 - Rep1ab only) [ Human Pathogens Alignment | Extended Alignment ]
Accessory Factors:
3a [ Human Pathogens Alignment | Extended Alignment ]
6 [ Human Pathogens Alignment | Extended Alignment ]
7a [ Human Pathogens Alignment | Extended Alignment ]
7b [ Human Pathogens Alignment | Extended Alignment ]
8 [ Human Pathogens Alignment | Extended Alignment ]
9b [ Human Pathogens Alignment | Extended Alignment ]
Orf10 [ Human Pathogens Alignment | Extended Alignment ]
Orf14 [ Human Pathogens Alignment | Extended Alignment ]
Structural protein:
Envelope (E) [ Human Pathogens | Human Pathogens ]
Membrane (M) [ Human Pathogens | Human Pathogens ]
Nucleoprotein (N) [ Human Pathogens | Human Pathogens ]
Spike (S) [ Human Pathogens | Human Pathogens ]