ProViz is an interactive protein exploration tool, which searches several databases for information about a given query protein. Data relevant to the protein like an alignment of homologues, linear motifs, post translational modifications, domains, secondary structure, sequence variations and others are graphically represented relative to their position in the protein. The tool is developed by the Davey Lab in University College Dublin by Peter Jehl, Jean Manguy and Norman Davey.

Funding

The project is funded by a Science Foundation Ireland Starting Investigator Research Grant (SIRG) grant.

Reference

Download

The ProViz tool has been uploaded to the Bitbucket Git repository and is available for download here. If you have any additions please feel free to contact us about the possibility of incorporating it into the codebase. Please look into the URL-based custom track functionality as this offers many of the required functions without any need to alter the codebase. We are also very happy to add any interesting functionality required please make any suggestions here.

License

The ProViz tool is available for download and use under a GNU General Public License. It allows the users (individuals, organizations, companies) to run, study, share (copy), and modify the software. However, it requires that when distributing derived works, the source code of the work must be made available under the same license. For the full license please see the GNU GPL Version 3.

ProViz - protein visualisation tool
Copyright (C) 2016  Norman E. Davey, Peter Jehl, Jean Manguy

This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.

This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
GNU General Public License for more details.

You should have received a copy of the GNU General Public License
along with this program.  If not, see < http://www.gnu.org/licenses/ >.

Author contact: Norman E. Davey < normandavey@gmail.com >  Conway Institute, University College Dublin, Belfield, Dublin 4, Ireland.
Author contact: Peter Jehl < peter.jehl@ucdconnect.ie >  Conway Institute, University College Dublin, Belfield, Dublin 4, Ireland.
Author contact: Jean Manguy < jean.manguy@ucdconnect.ie >  Conway Institute, University College Dublin, Belfield, Dublin 4, Ireland.
					

EULA

The ProViz tool is available for use according to the ProViz end-user license agreement (EULA).

Cookie policy

The ProViz tool cookie policy is available here.