Format: WRPW motif example

Format
The motif consensus search uses a regular expressions to scan proteomes. The motif regular expressions are defined with single-letter amino acid codes following the ELM resource motif definitions. Examples and guidelines are below.

Examples

Motif	Consensus
KEN box motif	KEN
Cyclin-binding RxL motif	[KR].L.{0,1}[LF]
C-terminal KDEL Golgi-to-ER retrieving signal	[KRHQSAP][DENQT]EL$
N-terminal myristoylation site	^M{0,1}G[^EDRKHPFYW]..[STAGCN][^P]

Special characters

Character	Name	Meaning
.	dot	Any amino acid allowed
[...]	character class	Amino acids listed are allowed
[^...]	negated character class	Amino acids listed are not allowed
{ min, max }	specified range	Min required, max allowed
^	caret	Matches the amino terminal
$	dollar	Matches the carboxy terminal

 

Choose options

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Disorder score cut-off :

0.40

Flank length :

5

 

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